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ImmuneCODE database

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The ImmuneCODE™ database, which includes hundreds of millions of T-cell Receptor (TCR) sequences from over 1,400 subjects exposed to or infected with the SARS-CoV-2 virus, and over 160,000 high-confidence SARS-CoV-2-specific TCRs. The database is accessible at no cost. Its data can be analyzed to aid global initiatives aimed at comprehending the immune response to the SARS-CoV-2 virus and crafting novel interventions. To learn more about the dataset refer the associated publication.

The latest ImmuneCODE datasets available contains: Release 002.

  • The 1,486 subjects exposed to or infected with the SARSCoV-2 virus: ImmuneCODE-Repertoires-002.2.
  • The sample metadata: ImmuneCODE-Repertoire-Tags-002.2.tsv (572 KB) Release 002.2.
  • The high-confidence SARS-CoV-2-specific (Over 160,000): ImmuneCODE-MIRA-Release 002.1.
  • The sample metadata: ImmuneCODE-Repertoire-Tags-002.2.xlsx (352 KB) Release 002.2.

Note

Microsoft provides Azure Open Datasets on an “as is” basis. Microsoft makes no warranties, express or implied, guarantees or conditions with respect to your use of the datasets. To the extent permitted under your local law, Microsoft disclaims all liability for any damages or losses, including direct, consequential, special, indirect, incidental or punitive, resulting from your use of the datasets.

This dataset is provided under the original terms that Microsoft received source data. The dataset may include data sourced from Microsoft.

Data source

This dataset is a mirror of https://clients.adaptivebiotech.com/pub/covid-2020

Data volumes and update frequency

This dataset contains approximately 228 GB of data and is updated daily.

Storage location

This dataset is stored in the West US 2 Azure regions. Allocating compute resources in West US 2 is recommended for affinity.

Data access

West US 2: 'https://dataset1000genomes.blob.core.windows.net/dataset'

West Central US: 'https://dataset1000genomes-secondary.blob.core.windows.net/dataset'

SAS Token: sv=2019-10-10&si=prod&sr=c&sig=9nzcxaQn0NprMPlSh4RhFQHcXedLQIcFgbERiooHEqM%3D

Use terms

To learn more about the data use terms refer the publication and Terms of Use.

Contact

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7418738/

Next steps

View the rest of the datasets in the Open Datasets catalog.