OpenCravat: Open Custom Ranked Analysis of Variants Toolkit
Note
Important Update 9/19/2024: All URLs are changing. We are enabling public access to all Genomics Data Lake containers. The existing “signed URLs” (shared access signatures) will be retired at: 2024-11-04T00:00:00Z. After this time, the URLs without a query string will continue to work, however the “signed URLs” will no longer work and will return a 403 HTTP status code. Please plan accordingly to access the public URLs without a query string after this date (remove the ‘?’ and trailing characters).
OpenCRAVAT is a Python package that performs genomic variant interpretation including variant impact, annotation, and scoring. OpenCRAVAT has a modular architecture with a wide variety of analysis modules and annotation resources that can be selected and installed/run based on the needs of a given study.
For more information on the data, see the OpenCravat.
Note
Microsoft provides Azure Open Datasets on an “as is” basis. Microsoft makes no warranties, express or implied, guarantees or conditions with respect to your use of the datasets. To the extent permitted under your local law, Microsoft disclaims all liability for any damages or losses, including direct, consequential, special, indirect, incidental or punitive, resulting from your use of the datasets.
This dataset is provided under the original terms that Microsoft received source data. The dataset may include data sourced from Microsoft.
Data source
This dataset is a mirror of the store at https://store.opencravat.org and https://run.opencravat.org
Data volumes and update frequency
This dataset includes 500 GB of data, and is updated daily.
Storage location
This dataset is stored in the West US 2 and West Central US Azure regions. Allocating compute resources in West US 2 or West Central US is recommended for affinity.
Data Access
West US 2: 'https://datasetopencravat.blob.core.windows.net/dataset'
West Central US: 'https://datasetopencravat-secondary.blob.core.windows.net/dataset'
SAS Token: sv=2020-04-08&st=2021-03-11T23%3A50%3A01Z&se=2025-07-26T22%3A50%3A00Z&sr=c&sp=rl&sig=J9J9wnJOXsmEy7TFMq9wjcxjXDE%2B7KhGpCUL4elsC14%3D
Use Terms
OpenCRAVAT is available with a GPLv3 license. Most data sources are free for non-commercial use. For commercial use, consult the institutional contacts for each data source.
Contact
rkarchi1@jhmi.edu
Next steps
View the rest of the datasets in the Open Datasets catalog.